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We used an unsupervised hierarchical clustering method that grouped genes on the vertical axis and samples on the horizontal axis, on the basis of similarity in their expression profiles.
Clustering ordered proteins on the horizontal axis, and tumor samples on the vertical axis on the basis of similarity of their expression profiles.
In these charts, subtiles are ordered and positioned along the horizontal axis on the basis of four types of quality indicator following: (1) read density, (2) average QV, (3) proportion of low-quality reads, and (4) average MapQ, any of which users can choose to generate the graph.
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Drosophila melanogaster uses an elaborate network of genes to pattern the DV axis during embryogenesis on the basis of the oocyte polarity established during oogenesis (discussed in [ 89, 120]; further references in Additional file 1).
First, the dimension of the dendritic arborization along the dorsoventral axis was measured on the basis of the number of horizontal sections in which dendrites of the filled neuron were present multiplied by the thickness of the sections, taking into account the shrinkage factor.
The elements on the x-axis are chosen on the basis of their general solid/melt bulk distribution coefficients (or 'incompatibility') of elements in magmatic systems (e.g., Sun and McDonough 1989) and their fluid immobility.
The mean electrical axis (MEA) was calculated on the basis of algebraic sum of QRS complex amplitudes in leads I and III plotted on the coordinate system.
An approximate procedure is proposed in the paper to estimate the fracture toughness of heavily drawn steels in both longitudinal (wire axis) and transverse (perpendicular) directions, on the basis of the critical load at the pop-in situation and at the critical failure instant (maximum load).
Temperature dependence of apparent crystallite modulus along the chain axis Eappc has been measured on the basis of X-ray diffraction measurement under the assumption of homogeneous tensile stress distribution for the uniaxially-oriented ethylene-tetrafluoroethylene (ETFE) alternating copolymers with and without the third monomer component of short or long side groups.
Indeed, in contrast to M3 and M4, the residues in M1 and M2 are homogeneously conserved (as noted in the Figure 2a of ref. [11]) so that the orientation around their principal axis cannot be determined reliably on the basis of conservation alone.
This step adjusts the mass scaling (x axis) of the entire spectrum on the basis of the naturally occurring sample peaks.
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