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Exact(1)
For (I), and for the two average structures, the assignment corresponds to that of Hangan et al. For (II), the agreement with the experimental spectrum is improved by exchanging the assignment of C6 and C10 (see Table 3 ▶).
Similar(59)
To gain insight into the effects of the V74G mutation and the residues with which it interacts, we examined the average structures from the MD simulations of each mutant in the residues proximal to Val74.
While the three ensembles here have similar average structures, only the narrow A-ensemble has structures that are very similar to the average.
Average structures from the equilibrated trajectories were extracted and subsequently served for further docking experiments.
Figure 5A shows the average structure of the R,R-duplex in the region of the C G, R T and A T base pairs.
Figure 1B shows an expanded view of the average structure at the cross-linked and the neighbor base pairs from the minor groove.
This difference in the conformation of Tyr may be a result of the hydrolysis because we are comparing the covalent-orlistat in the simulated average structure with the hydrolyzed orlistat in the crystal structure.
Therefore, the oblate shape represents the average structure of the amelogenin agglomerates which may well be flexible in nature.
In order to compare the protein structures from the four different systems, their representative structures were selected from each simulation and those are the most closed conformation to the average structure for the last 2 ns snapshots.
Figure 1A shows an expanded view of the average structure at the cross-linked and neighbor base pairs from the minor groove.
We selected the starting structure of each MD and the average structure of the respective simulation to be compared.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com