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A RPK of 60 represents an average sequence depth of 3; the human genome sequence standard for 99% accuracy (http://www.genome.gov/10000923).gov/10000923
The average sequence depth was 52, 196 and 69.
Only the five accessions with an average sequence depth greater than 10x were compared.
In total, 10.6 million reads were generated, corresponding to an average sequence depth of 180 reads.
a Average sequence depth in the complete region covered by the HaloPlex design.
c Average sequence depth at the 1528 candidate SNVs and SNPs covered by the HaloPlex design.
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An example of the coverage of one of the target genes as well as the positions of the probes and the repeat elements in both types of libraries is shown in Figure 2. We obtained average sequence depths of 59 to 101 for the Nimblegen libraries and 86 to 113 for the SureSelect libraries after downsampling (Table 2).
The average sequence depths of these SLAFs were 35.15-fold 35.15-folds and 4.00-ford for each individual.
First, average sequence depths should be >7-fold in each progeny and >80-fold in the parents.
The average sequence depths of SLAF markers were greater than 10-fold in parents and greater than 3-fold in progeny.
The average sequence depths of these SLAFs were 68.06 in the female parent, 56.21 in the male parent and 7.91 in the progeny.
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