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The distributions of PIC values and allele numbers are shown in Figure 3. Average PIC values were 0.4795 and 0.3908 for the polymorphic di-nucleotide and tri-nucleotide based markers, respectively.
Average PIC values for the SSR were 0.5.
The average PIC values at the seven SSR loci in this study and the previous study were 0.59 and 0.78, respectively, suggesting that relatively high levels of polymorphisms were observed among local varieties collected from one country.
That the average PIC values (0.21 for Asplenium, 0.25 for Garovaglia) are lower than previous DArT studies in barley (0.38) [7] and cassava (0.42) [10], and is likely due to the choice of sample sets with a strong structure, and clearly defined outgroups.
Average PIC values varied between chromosomes.
Average PIC values ranged from 0.183 (penta repeats) to 0.725 (tetra repeats).
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The global average PIC value was 0.41; loci on chromosome E02 had a low mean PIC value (0.28), while the mean PIC for the remaining loci on a chromsome-by-chromosome basis lay between 0.38 and 0.46 (Additional file 2: Figure S1B).
Similarly to our results the highest average PIC occurred in winter triticale for 1R, but the lowest chromosome specific average PIC value, was observed for 3R.
The PIC value, a measure of allelic diversity at a locus, ranged from 0.12 (Sato568) to 0.80 (Sand115), and the average PIC value was 0.55 (Fig. 3B).
Average PIC value was 0.49 with a range of 0.014 for NFA140 to 0.95 for NFA047.
PIC value represents the relative informativeness of each marker and in the present study, the average PIC value was found to be 0.468.
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