The phrase "average pathways with" is correct and usable in written English.
It can be used in contexts discussing typical routes or methods in various fields, such as biology, education, or data analysis.
Example: "The study aimed to identify average pathways with the highest success rates for student learning outcomes."
Alternatives: "typical pathways involving" or "standard routes with".
Branch lengths were calculated using the average pathway method [77].
The centrality of the universal pathways is also indicated by their average connectivity (4.8 links per pathway), which is higher than the average connectivity of pathways with a more novel origin (3.2, 3.5, and 3.4, for pathways with eukaryotic, metazoan and vertebrate origin, respectively).
In this case the effect of replacing the above pathway feature with the averaged pathway feature ∑ i ∈ leading edge genes x ~ ij (with appropriate final normalization) allows avoidance of the noise inherent in overly noisy weights w i, as well as denoising by equal averaging of the test data noise terms z ij.
The study, in which only the pathways with average IPA score >2 (−log (P value)) were included, revealed that the most probable genes modified by these miRNA correspond to pathways directly related to RA (that is, the role of macrophages, fibroblasts and endothelial cells in RA, the role of osteoblasts, osteoclasts and chondrocytes in RA, and the role of IL-17A in RA).
The approximate false discovery rate was calculated by averaging the number of pathways with a p-value less than that obtained using real data.
In turn, GSCA preferentially identifies pathways with averaged correlation changes, as we would expect for metabolic pathways affected by p53 status through homeostatic regulation of energy and amino acids metabolisms.
We successfully reconstructed 660 primary pathways with an average length of 2.6 edges, including 48 pathways of size zero (directly from a perturbed TF to its targets).
Interestingly, Cyanobacteria dedicated about 5% of their genomes for these pathways, with an average of five NRPS/PKS clusters per genome [ 1].
On average, an unbranched pathway with control by overall feedback inhibition is less sensitive to perturbations in the values of the parameters that define the system.
We average these numbers across all open pathways, which are pathways with no intermediate sequences that contain stop codons.
