We retained for analysis the 1 705 237 genotyped and imputed SNPs with, on average over individuals, probability ≥0.9 assigned to their most likely genotype.
Then a population-level allele frequency is estimated by taking an average over individual-level allele frequencies from genotype data (Equation (A3)) or intensity data (Equation (A4)).
In an IGE, a population-level allele frequency can be estimated by taking an average over individual-level allele frequencies from genotype data (Equation (A1)) or intensity data (Equation (A2)).
The overall inbreeding coefficient f can be written as an average over individuals or over loci (30) ∑ i = 1 n n − 1 ϕ i = ∑ k = 1 m ˜ β k f k = f where the weights β k are given in Equation 12.
The visibility length statistics (mean and standard deviation) over all extracted MPCs are different from the statistics averaged over individual measurements.
Assuming a model of independent rates for each site and averaging over individual branch lengths as described in [42] proved to be useful in distinguishing recombination from non-random rate heterogeneity.
The ratio of nuclei containing aggregates out of total counted was recorded for several sections and averaged over individual mice by genotype.
Each chromosome provides an imprecise estimate of the time since the origin of the haplotype; values were averaged over individual populations, or the entire sample.
Instead of averaging over individual bouts, a running list of sleep bouts of all flies of one genotype can be pooled and the frequency of each distinct bout length can be determined to produce a distribution of the type shown in Figure 2A (purple squares).
