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Unlike lineage I, lineage II represents a genetically heterogeneous population with a relatively high proportion (30% average) of genetic material imported from external sources.
The average of genetic indices (P, He, and Shannon's information index) and He of each of the SNP positions with ecogeographical variables appear in Table 6.
ClinSeK identifies the variant status through a Bayesian model parameterized by 1) contamination (default to 0.01); 2) sequencing error rate (default to 0.001); and 3) empirical mutation rate (default to 0.001, the average of genetic diversity in normal human population [ 25]).
Both the range and the average of genetic divergences detected will vary according to the taxonomic group selected and be influenced by the phylogenetic relatedness of selected species, as well as by the number and geographical distribution of species and specimens in a data set [ 19, 28, 29, 93, 94].
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One could expect that the comparisons between horses in lots of events would enable to correctly estimate the genetic as well as the environmental effect and then, that the averages of genetic and environmental effects in each event are correct.
Among these, 26 loci were polymorphic and the average values of genetic diversity were: average number of alleles per locus (A ¯ ) = 6.54, average number of alleles per polymorphic locus (A ¯ p ) = 7.13, average observed heterozygosity (H ¯ o ) = 0.22, average expected heterozygosity (H ¯ e ) = 0.49, and average fixation index (F ¯ ) = 0.55.
The program therefore infers for each site of each sequence its posterior probability of deriving from any of the K ancestral subpopulations, and by averaging these probabilities over all sites, we get the average proportion of genetic material derived from each ancestral subpopulation by each individual.
On average, results of genetic analyses were available in 8 days (range, 6 11 days).
The average ratio of genetic to physical distance was 260 kb/cM genome-wide, with local differences ranging from 4 kb/cM to 3 Mb/cM.
As described above, we calculated that the average percentage of genetic identity shared between any two individuals through common descent for all possible pairs (related and unrelated) was 0.3%, which is less than the degree of relationship between third cousins.
Will their moderate to high average levels of genetic diversity be sufficient to allow for rapid adaptation despite long generations?
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