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In a streaming cipher the key is incoherent i.e., the uncertainty that the cryptanalyst has about each successive key symbol must be no less than the average information content of a message symbol.
We therefore filtered the 4378 motifs to limit redundancy, preferentially retaining matrices with greater average information content.
The Shannon [53] and Gibbs [54] entropies were used to measure the average information content and the thermodynamic stability of the miRNA sequences, respectively.
Each bar represents a bin containing 10% of the words in the lexicon, with a size proportional to the average information content of the words in the bar.
Each bar represents the same amount of words within a language and has an area proportional to the rescaled average information content carried by these words.
If two matrices with the same IUPAC consensus were found, we excluded whichever matrix had lower average information content, except when the average difference of values in PPM matrices exceeded 0.05.
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We compiled the mutation spectra for all mutations that significantly affected the strengths of donor and acceptor splice sites and compared these with the average information contents at each position.
For the next step in the pipeline the known transcription factor binding sites for each of the 69 characterized TFs of CG have been re-adjusted resulting in an average improvement of the mean information content of the underlying position frequency matrices of ~23% (see additional file 2).
Grapevine SNP show lower diversity values than SSR (0.65; [ 37]), and therefore are less informative markers (average polymorphism information content – PIC – for SNPs is 0.25 as compared to 0.60 for microsatellite [ 37]).
Average genetic similarity (GS) coefficients and average polymorphic information content (PIC) values varied among chromosomes.
Experimental validation of a set of 77 SSR markers on 24 genotypes revealed 230 alleles with an average of 4.6 alleles per marker and average polymorphism information content (PIC) value of 0.43.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com