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As expected, average evolutionary rates plotted as a function of time were higher for the non-coding STS2 sequence data set compared to the PCWDEs (Figure 3).
As seen in Table 1, except for the transcription regulation network, each of the biological networks exhibits a significant correlation between the evolutionary rates of focal proteins and the average evolutionary rates of their neighbours (p<0.002 from comparison to random pairs in each case).
We observed that the average evolutionary rates are slow in SHD group, intermediate in SPD group, and fast in ND group.
Here, we demonstrate that 33 microRNA families, with similar copy numbers and average evolutionary rates, are conserved in the two congeneric cottons.
Our data cannot indicate whether average evolutionary rates vary during the course of a single chronic infection, and this question remains an important area for future research.
One study parameterized a model of evolutionary responses to climate change based on estimates of phenotypic variation in critical thermal maxima and average evolutionary rates in amphibians and reptiles (Skelly et al. 2007).
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This anomaly occurs because the more recent the divergence of any two species, the more likely it is that the changes observed will depart from the average evolutionary rate.
We considered each protein in turn as the 'focal' protein, and calculated the average evolutionary rate across its direct network neighbours.
Although this is not the fragment proposed as a standard barcode (5), our results can be generalized because the average evolutionary rate of both cox1 fragments is similar.
If we assume it is 75 years then the average evolutionary rate of the potyvirus populations is 1.173×10−4 ns/s/yr and hence the potyvirus radiation occurred 6353 YBP.
Model fitting – relationship between average evolutionary rate estimate and measurement timescale.
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