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The average alignment ratio calculated by the proposed method for main domains were 7% smaller than that for swapped domains.
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However, these measures were not as effective in separating DS-related homologs from common homologs, as evidenced by the relatively low MCC and sensitivity for this part (MCCs<0.80 and average sensitivities≤0.88), which declined as the alignment ratio cutoff became lower (Fig. 2f).
Computational performance shows an average alignment time of 2.5 s.
Examples of alignments are presented in Figure 4. Table 10 Average alignment errors for different sets of singing-adapted models.
The average alignment length was 552.8 nt.
Average percent identity was approximately 92%, with an average alignment length of 384 bp, and 51,087 contigs (91%) produced a unique alignment to a single chromosome (Table S6).
For an average neurite that is 225 μm in length for the HMA- co-HDDMA series, the neurite would travel an extra 30 μm of unaligned distance, that is, outgrowth that is not in the direction of the micropattern features, on the softest substrate with an alignment ratio of 1.32 compared to the stiffest substrate with a neurite alignment ratio of 1.18.
The average alignment length was approximately 20.5 kb.
The average alignment coverage is 9X per individual.
Of the alignments created, 4 171 (18%) showed an average alignment depth of 100 or more.
B) Average bootstrap proportions within one tree plotted against the average alignment length.
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