Sentence examples for average alignment rate from inspiring English sources
Using Bowtie 2 (Langmead and Salzberg 2012), reads were aligned to the reference genome sequence UMD 3.1 with an average alignment rate of 97.6%, that covered 99.23% of the genome (supplementary table S1, Supplementary Material online).
The average alignment rate was 0.89 (s.d. 0.02) and 0.86 (s.d. 0.03) for human and mouse, respectively.
Sequencing samples have an average depth of 9.75 million reads, with an average transcriptome alignment rate of 49% (Table S1).
On average, 36 million uniquely aligned reads were obtained per data set, representing an average unique alignment rate of 76%.
Mapping all RNA-seq reads against both transcriptomes (CLC or Velvet/Oases) revealed that the overall mapping success rate, as a measure for assembly quality, was significantly lower for the Velvet/Oases assembly compared to the CLC assembly (see Additional file 1), with an average overall alignment rate of 91.7 % and 73.4 % for the CLC and Velvet/Oases assembly, respectively.
The overall alignment rate of reads to the reference sequence was 97.6% with an average read depth of 12.0× (8.77× to 14.77×).
We retained alignments with an alignment rate of more than 70% and a mapping identity of more than 40%.
Computational performance shows an average alignment time of 2.5 s.
Examples of alignments are presented in Figure 4. Table 10 Average alignment errors for different sets of singing-adapted models.
The average alignment length was 552.8 nt.
