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Additional information is becoming available in the form of genetic based estimates of long-term average abundance for both the eastern and western North Pacific populations taken together [64] and improved estimates of present day abundance [65].
All normalized spot quantities from the gels were collectively analyzed as two independent groups "Tumor" and "Benign", which enables matching of multiple gel images from different patients to provide statistical data on average abundance for each protein spot among the DIGE gels included in analysis.
The average abundance for AOA was 1.9 × 10 copies per nanogram DNA for five phases.
Overall, the average abundance for AOB was 1.2 × 10 copies per nanogram DNA for five phases.
To compare H2B isoform abundances, we normalized the relative abundance for each isoform to the average abundance for that isoform across all of the cell lines.
Figures 6 and 7 show the density plots of three statistics for these significant comparisons: average abundance for the OTUs, log2-fold change (no-yield-decline samples over yield-decline samples) and BH-adjusted p-values.
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This is in the same order of magnitude as our average abundance of the key proteins for the endogenous system, which we estimated to be 7·10 copies per cell.
In effect, the neutral scenario has the lowest average abundance of individuals per species, n, for a community of size K with given average R, which is also reflected in the modal values in Fig. 3 histograms for K = 1000 patches.
However, a recent study of the Wnt pathway in HEK293T cells reports an average abundance of 1.6·10 copies per cell for these signaling molecules [ 45].
Figure 5h exhibits that average abundance of NPs size is 25 nm for Fig. 5a.
There were 59 genera left for network construction after discarding genera with average abundance of less than two reads.
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Justyna Jupowicz-Kozak
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