Exact(4)
Structured information on explicit PPIs extracted from MEDLINE and other sources is freely available in the STRING database [10], or can be found by querying the iHOP website [11].
The annotation of ppk2 to Sulfurovum sp. NBC37-1 and ppx to Clostridium difficile 630 from marine surface water samples highlights the fact that speciation of isofunctional homologs based on reciprocal best-hit analysis is limited to the number of species currently available in the STRING database.
Information about the interaction of the Arabidopsis subtilisins is available in the STRING database, but it is not available for Cucumisin.
Tags were matched to the non-redundant wheat UniGene set (Build #38) produced at NCBI. "Fuzzy" tag matching was performed using the PERL "aindex" function available in the String::Approx module.
Similar(56)
Use the length instance method, available in every string to get an integer with the length of the string you called length from.
W a = N · n · W p, where W p is the available capacity of the solar panel in the string.
Known and predicted protein-protein interactions of HMGA1 in the STRING database (available at http://string-db.org ).
In summary, our example demonstrates that our curation and network building workflow can be used to provide a level of detail about protein forms and kinases that goes beyond the information available in STRING.
Free text searching allows the user to find chemical compounds by chemical names and identifiers, SMILES [66] and InChI strings, and any keywords available in the OpenTox data infrastructure.
Likewise, Q p (p1, p2) was set to zero if the interaction between p1 and p2 is not available in STRING.
Here, we extended the analysis to all Eukaryotic Clusters of Orthologous Groups (KOG) available in STRING.
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