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Primers used for the amplification of target cDNAs were designed from conserved regions of related sequences available in the databank (http://www.ncbi.nlm.nih.gov/).nih.gov/
In this context, CrossTope provides images of the charges distribution over the TCR-interacting surface of each pMHC-I available in the databank for cross-reactivity prediction (as in the example provided earlier in the text).
The customized data extraction utilities for ENA (EMBL-Bank) database in BDE, thus, are a step forward towards more effective and improved extraction of data available in the databank and help in compilation of desired datasets for downstream processing.
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Its primary structure and an 11 Å cryo-electron microscopy (cryo-EM) structure have recently been determined, and the crystal structures of two related FU types are available in the databanks.
For ENAM and DSPP, only mammalian sequences were available in the databanks.
When including sequences available in the databanks (i.e. cytochrome b sequences from [ 66]), numerous species appeared to be paraphyletic (data not shown).
Previous studies that relied on parasite morphology found 2 plasmodia in orangutans; P. pitheci and P. silvaticum (4, 7 ), but no DNA sequences with which we could compare our data are available in the databanks for these 2 species.
All sequences used in this study is available in the DNA Databank of Japan.
As confirmed later in an in-silico study on all eubacterial sequences available in the NCBI databank, the distribution of the tspO gene is wide but very irregular.
There are very few experimentally-determined high-resolution structures of membrane proteins available in the Protein DataBank due to difficulties in their over-expression, purification and crystallization [39].
The heatmap of Figure 4 summarizes the expression of these 15 miRNAs in the gastric cardia and across normal human tissues, DGE data, available in the microRNA.org databank [10], [11].
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