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Availability: Code for the C2A method, as well as the examples discussed in this article, are freely available at www.simtk.org/home/c2a.org/home/c2a
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Availability: Source code for RAF is available at: http://contra.stanford.edu/contrafold/ Contact: [email protected] The secondary structure adopted by an RNA molecule in vivo is a vital consideration in many bioinformatics analyses.
Availability: Source code for CARROT is freely available at http://carrot.stanford.edu.edu
Availability: Matlab code for performing GPR bootstrapping is available from our web site: http://www3.imperial.ac.uk/theoreticalsystemsbiology/data-software/ Contact: [email protected], [email protected] Supplementary information: Supplementary data are available at Bioinformatics online.
Availability: Source code for a cross-platform implementation in Python is freely available at http://code.google.com/p/emsampler.com/p/emsampler
Availability: Source code for FACS, Bloom filters and MetaSim dataset used is available at http://facs.biotech.kth.se.se
Availability: Matlab code for training MI-1 SVM and the cascaded classification approach is available on request.
Availability: The code for indexed MegaBLAST is part of the blastn program in the NCBI C++ toolkit.
Availability: Source code for software that does FISH tree building (FISHtrees) and the data on cervical and breast cancer examined here are available at ftp://ftp.ncbi.nlm.nih.gov/pub/FISHtrees.nih.gov/pub/FISHtrees
Availability: The source code for RIsearch is available at: http://rth.dk/resources/risearch.
Availability: The source code for DNorm is available at http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/DNorm, along with a web-based demonstration and links to the NCBI disease corpus.
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