The phrase "automatically annotated with" is correct and usable in written English.
It can be used when describing a process where information is added to a document or dataset without manual intervention.
Example: "The dataset was automatically annotated with relevant tags to facilitate easier searching and categorization."
Alternatives: "automatically labeled with" or "automatically tagged with".
More recently, the OntoGene group created a version of ODIN that allows inspection of abstracts automatically annotated with PharmGKB entities [the annotation is performed using the OntoGene pipeline (http://www.ontogene.org/pharmgkb/)].
Such set presented a high number of genes that, although being automatically annotated with metabolic functions, were later discarded by the annotation pipeline depicted in Figure 3 (false positives).
In this paper, we explain how the columns of the data tables are automatically annotated with data types of the ontology and how the relations represented by the table are recognised.
Each image in a large test collection is then automatically annotated with the a posteriori probability of concepts present in it.
The Xf-ALS and Xf-OLS candidate prophage-like regions were computed and automatically annotated with BlastX searches [39].
The result files are also automatically annotated with this information.
Our new, flexible, and scalable process mined the documents for particular legal information, and automatically annotated the documents with metadata, marked up in XML.
Alleles were automatically annotated and assigned with the appropriate allele number for those loci for which definitions exist, in a process referred to as 'tagging' while new alleles were manually curated and assigned a new allele accession number.
All sequences of each putative orthologous cluster were automatically annotated (using BLASTP with an E-value cutoff of 10−5) against the Clusters of Orthologous Groups (COG) database (Tatusov et al. 2000).
Our results demonstrate that conclusions based only on databases with automatically annotated ncRNAs can be erroneous.
BioDEAL provides a Web browser tab to an NLP interface where users may execute NLP tools on publications to populate the BioDEAL database with automatically annotated evidence that is presented to the user through the User Frontend Interface.
