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Next, full-length cDNA sequences were compared with genome sequences comprising each locus and ORF sequences automatically annotated from the genome.
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Clinical features have been semi-automatically annotated from the clinical notes by applying a Natural Language Processing NLPP) tool, MedTagger suite.
Performance on a corpus of 70k automatically annotated documents from the Reuters News Archive is 0.89/0.76 precision/recall for mention detection and 0.94/0.95 precision/recall for resolution resulting in an 0.84/0.72 precision/recall for detection and resolution combined.
The identified BvMYB genes were matched with the automatically annotated MYB genes from the study of Dohm et al. ([ 26]).
Multiple samples can be imported into the system in a batch mode and variants are automatically annotated with rs-ids from dbSNP (13), effect of variants on refSeq genes (15) and with various scores for conservation and predicted consequences on protein function through dbNSFP (22).
The metagenomes obtained from the three consortia were automatically annotated using the MG-RAST server, from which statistically significant differences in community composition and metabolic profiles were determined.
A sub-group of 35 genomes was automatically annotated using the genome annotation system GenDB [ 42].
Well-conserved genes were automatically annotated but less certain annotations were manually assigned.
The BIGSdb 'autotagger' function identified and automatically annotated an average of 1899 CDS from each assembled genome, with only a small number of paralogous loci (no more than 20) in the pan-genome.
Trembl contains protein sequences that are translated from nucleotide sequences and automatically annotated.
Data from generic (and sometimes automatically annotated) databases such as Uniprot and HPRD was included only when supported by other sources.
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