The phrase "automated pathways" is correct and usable in written English.
It can be used in contexts related to technology, processes, or systems that operate automatically without human intervention.
Example: "The new software utilizes automated pathways to streamline data processing and improve efficiency."
Alternatives: "automated routes" or "automated processes".
Following that, we present automated pathway and pathway pair classification using four microarray data sets.
However, to perform large-scale pathway analysis, automated pathway annotations or to extract the non-redundant pathway data from various resources, dynamic web-based API service (available in KEGG, REACTOME, PANTHER, WikiPathways, CPDB, etc). is useful (see Supplementary Tables S2 and S3).
Total vessel density (TVD) was assessed in parallel using manual computer-assisted image analysis as well as a fully automated analysis pathway utilizing a newly developed computer algorithm.
The video files were analyzed in parallel using manual computer-assisted image analysis representing the current gold standard [34], as well as a fully automated analysis pathway utilizing a newly developed computer algorithm.
These predictions can be mined and correlated with other information sources to generate biologically significant hypotheses and can be useful for comparative genome analysis and automated metabolic pathway reconstruction.
This feature together with the full standardization of our annotations (EFICAz always reports EC numbers rather than enzyme names; although the latter are also provided) will be very useful for comparative genome analysis and automated metabolic pathway reconstruction, and will also facilitate the incorporation of EFICAz predictions to other functional databases.
We address this limitation by automating our pathway analysis using queries to the well-known Gene Ontology database.
Such maps are often constructed by manual curation of the literature or automated curation from pathway databases [ 15].
Images were acquired using a BD pathway 855 automated microscope (BD Imaging Systems, San José, USA) equipped with a 40X objective (Olympus, Center Valley, USA) coupled to a robotised Twister II plate handler (Caliper Life Sciences, Hopkinton, USA).
For videomicroscopy, HCT 116 cells stably expressing a H2B-GFP fusion were grown in 96-well imaging plates (BD Biosciences) under standard culture conditions and subjected to pulsed observations (every 7 min for up to 48 h) with a BD pathway 855 automated live cell microscope (BD Biosciences).
