Sentence examples for automated alignment and from inspiring English sources

Both automated alignment and manual alignment based on a prior homology model for VirB2 [122] support a conserved Ala residue at the predicted signal peptide cleavage site, as well as two hydrophobic TMS regions.

While automated alignment and annotation algorithms serve to provide a good approximation of most EST identities, manual scrutiny and annotation is necessary to improve fidelity.

We therefore present a potential supportive tool for PCa diagnostics since this allows for automated alignment and fast visualization of areas of interest on differently stained sections.

The automated alignment and SNP detection from re-sequencing data where a reference genome sequence is not available is an on-going challenge.

Automated alignment analysis and quality control at every step ensure that homologs selected meet user-specified criteria.

PKW developed the PlantTribes database and developed software for gathering data for characterization and automated alignment for EST-based analyses.

Automated alignment methods are clearly necessary and useful where large amounts of data are to be processed or in situations where no additional expert information is available.

Automated alignment based on cost regimes and maximizing sequence identity proved to be a failure in this respect, mainly due the among-region evolutionary rates of substitution and the incidence of insertions and deletions (indels) [ 47].

First, a new official gene set has been released since one of these studies, and second, the automated alignment procedure used in these studies would be unlikely to align ESTs to small genes (orphans are known to be small genes).

A comprehensive method is presented that uses 6-μm-thick serial sections of frozen tissue samples, immunostaining for CD31, brightfield microscopy, automated alignment of two-dimensional serial sections, and volume rendering to produce high-resolution, three-dimensional, quantifiable images of microvascular structure.

Following automated alignment, it is usually necessary to check, correct and trim the alignment manually, and check sequence differences between individual sequences, which is easily done in the sequence editor included in ProSeq3.