Sentence examples for atoms were represented from inspiring English sources

Whereas in the original work [1] atoms were represented by their element number and partial charge, we employ a bounded depth-first-search to enumerate the complete neighbourhood of each non-carbon atom up to specified depth.

Ligand atoms were represented by the most similar Rosetta atom type, their coordinates were re-centered to the origin, and their partial charges were assigned by OpenEye's AM1-BCC implementation.

Atoms are represented by thermal ellipsoids corresponding to 30% probability.

The other C and H atoms are represented by the smallest circles.

Si and Au atoms are represented by red and yellow dots, respectively.

Fe, Co, Mg, and O atoms are represented by yellow, blue, green, and red balls, respectively.

Ge/Si, Mo, and S atoms are represented by blue, purple, and yellow balls, respectively.

The Mg atoms are represented with their trajectory (pink dotted lines) during half a picosecond.

These adjacent atoms are also represented by labeled nodes, and the covalent bonds connecting them to interfacial atoms are represented as labeled edges.

2. Representation of interfacial atoms by un-directional graph; atoms are represented by labeled nodes, and distances connecting them are represented by labeled edges.

The electronic densities of the silicon atoms are represented as little hills and, as we can notice, there are open spaces because of the pore.