The phrase "atoms were excluded" is correct and usable in written English.
It can be used in contexts discussing scientific experiments, theories, or discussions where atoms are intentionally left out or not considered.
Example: "In the experiment, all larger molecules were analyzed, while atoms were excluded to focus on the interactions between the molecules."
Alternatives: "atoms were omitted" or "atoms were left out".
In this protocol, all ligand copies docked in a cycle and their surrounding target atoms are excluded from the next cycle (red in Fig. 2c), and only the unbound target surface (grey) is used for a next BD cycle.
Similarly, he writes in Primary Truths, "Something lacking extension is required for the substance of bodies, otherwise there would be no source [principium] for the reality of phenomena or for true unity… But since atoms are excluded, what remains is something lacking extension, analogous to the soul, which they once called form or species".
In both cases of HOMOs-1 and HOMOs, the overall distribution of occupied MOs is influenced by the presence of the kink and conformation of the backbone however it does not mean that Ph rings adjacent to the kink Si atoms are excluded from the delocalization.
Cartesian displacement upon energy-minimization with the unit cell free, where H atoms are excluded from the comparison.
Therefore, substances containing arbitrarily defined atoms (pseudo-atoms) were excluded from this analysis.
After points outside the cage or within van der Waals contact of a carbon atom were excluded, the isotropic chemical shift (relative to the gas-phase molecular hydrogen) was found to be δiso=−25.8 ppm, while the chemical shift anisotropy is =8.7 ppm.
Since cations cannot overlap with RNA atoms, all cells of grid C that are 'occupied' by RNA atoms, i.e. are within the van der Waals radius of an RNA atom, are excluded from the computation.
Consequently, the descendants of the atom [CHEBI 33250] entry were excluded from this experiment.
For a better scaling of the histograms, covalent units above 70 heavy atoms and above 30 rotatable bounds were excluded from the plots.
