Sentence examples for atoms to interact from inspiring English sources

Figure 2 The sialic acid binding site and the three pharmacophore filters defined for neuraminidase A. A) Site points, shown as red-dotted spheres, indicate the required positions of hydrogen bond-accepting or negatively charged atoms to interact with arginine residues in the acid binding sub-pocket.

DOI: http://dx.doi.org/10.7554/eLife.01519.013 The active site of DTD uses, in a major way, the main chain atoms to interact with the substrate.

The FTIR and XPS spectra indicate that the doped Al atoms prefer to interact with N and O atoms in Coq2 molecules.

This SS matrix is not symmetrical and the probability for atom i to interact with atom j is different from the probability for the atom j to interact with the atom i.

This created the first filter, to select for docked poses in the screening database with hydrogen bond acceptor atoms or negatively charged atoms in position to interact with the arginine residues.

Intramolecular contacts were estimated using the Connolly framework (Connolly, 1983) where two atoms are considered to interact if a solvent molecule cannot be inserted between their molecular surfaces.

These structures also show that in the absence of the His83 side chain, a water molecule can substitute for the missing Nδ atom of His83 to interact with the Oη atom of Tyr75 and aid its coordination to the ferric heme iron.

The atoms are allowed to interact with each other and various quantities such as pressure, temperature, energy, and so on are calculated.

In this position, the sulfate O1 atom has been predicted to interact with the ND2 atom of Asn-A74, its O2 atom with NE2 atom of His-A398, and its O3 atom via a water molecule with Arg-A265 and Trp-A234 and via two water molecules with Glu-A141, Asp-A361, and Asn-A74 (Fig. 10) [23], [24], [24].

One water molecule is found to interact with atom N29 of TKI258.

In particular, the gamma carbon atom of Pro593 is likely to interact with the delta 1 carbon atom of Ile528 at 3.4 Å, and the beta carbon atom of Pro593 is likely to interact with the delta 1 and the gamma 1 carbon atoms of Ile528 at 3.4 and 4.0 Å, respectively.