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The phrase "atoms that cannot" is correct and usable in written English.
It can be used when discussing the properties or behaviors of atoms in a scientific context, particularly when referring to limitations or restrictions.
Example: "In certain conditions, there are atoms that cannot bond with others, resulting in isolated elements."
Alternatives: "atoms unable to" or "atoms that are incapable of".
Exact(1)
In essence, these forms of carbon are zero- and one-dimensional versions of graphite, since buckyballs are individual molecules composed of exactly 60 carbon atoms that cannot extend themselves in any dimension, and buckytubes are molecular cylinders that can extend only along their lengths.
Similar(59)
However, the Thr99 side chain hydroxyl makes an additional H-bond with the pyridine O4 atom that cannot be accomplished in FMN-CPR because of the His at this position.
Though the word atom originally denoted a particle that cannot be cut into smaller particles, in modern scientific usage the atom is composed of various subatomic particles.
If a Substance chemical structure contains invalid or erroneous atom environment configurations that cannot be salvaged by standardization, the corresponding substance structure is rejected and not present in Compound.
If it then appears that there are high-density peaks that cannot be assigned because only light atoms were expected, chlorine, bromine or iodine atoms are added.
The presence of the world is an effect that cannot be explained by the activity of atoms alone.
R.H. concerns prime numbers, those atoms of ordinary multiplication, such as 5 or 11 or 1,223, that cannot be broken down -- factored into a product of smaller numbers.
Ultimate particularities belong to eternal substances, such as atoms and souls, and these account for all differences among particulars that cannot be accounted for otherwise.
So the mechanical atomist cannot apply knowledge of this kind, scale invariant or otherwise, to atoms that are presumed to lack such properties.
In the tenuous gases of space, however, the atoms (mostly hydrogen, with traces of other elements) the electrons and proton-heavy nuclei generally become separated, creating a plasma that cannot ignore a magnetic field.
That cannot go on.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com