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The phrase "at two different levels" is correct and usable in written English.
It can be used to describe a situation, concept, or process that involves two distinct layers or degrees of complexity, importance, or measurement.
Example: "The project will be evaluated at two different levels: the individual performance and the overall team dynamics."
Alternatives: "on two separate tiers" or "at two distinct stages".
Exact(60)
The differences of opportunities for mothers at two different levels of care (peripheral and referral) were statistically significant (Pearson X(2) = 12.53 P value = 0.002).
Generally, transcription regulation occurs at two different levels.
Traffic generation is driven at two different levels.
The magnitude of DIF was examined at two different levels.
Prior to this time these dinosaurs were usually found at two different levels.
This fusion is performed at two different levels, namely feature level and decision level.
Factorial design was carried out considering four factors each at two different levels.
SEBS has been sulfonated at two different levels of sulfonation (3 and 6 wt.%) by in situ-prepared acetyl sulfate.
As a technical novelty we demonstrate the integration of dynamics at two different levels of temporal derivative.
The proposed approach relies on the Dominance-based Rough Set Approach (DRSA), which is used at two different levels.
As first generation Critical Theorists saw it in the 1940s, this process of reification occurs at two different levels.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com