Exact(1)
Combining the length of N50 for these assemblies from both assemblers, the more reads that were used at the initial assembling step, the more unique bases that were constructed in the final assemblies.
Similar(59)
The initial assembling gave rise to 195 and 194 contigs from genomic DNA and cDNA, respectively.
From the initial assembled scaffold covering 255 Mb sequence data, 28,602 SSRs (≥5 repeats) were identified.
To evaluate the performance of assembling all libraries at the initial stage and assembling each library separately and then merging them for each of the two assemblers, we performed three assemblies, AFSFASSS, AFSF + ASSS, AF + SF + AS + SS, representing the assembly of all samples, samples with the same phenotype, and individual samples at the initial stage, respectively.
A de-Bruijn graph building approach was used for primary assembling in the initial stage of assembling, which provided long assembled sequences.
These two matrices can be pre-assembled at the initial time step and these two linear systems can be solved simultaneously.
Moreover, because we had four libraries reflecting different phenotypes and tissues, we evaluated the performance of assembling each library separately and then merged them or assembled all libraries at the initial stage.
The greatest concern for assembling all samples at the initial step is the loss of sample-specific transcripts.
Look at the initial encounter.
A multidisciplinary team consisting of radiation oncologists, radiologists, and oncologists assembled to review the medical charts and imaging data of the metastatic NPC patients, with a special focus on the anatomic extent of metastasis at the initial diagnosis.
Collectively, 3,542 successful reads were incorporated into initial assembles during the finishing phase.
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