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We confirmed the exon/intron junctions by looking at the alignments of predicted V2R sequences, because V2R genes contain multiple exons.
Similar(59)
Here, the ASV can be located aligned with the femoral vessels at the "alignment sign".
As Brown and Batygin began to look more closely at the alignment of Sedna, 2012 VP113, and the rest, they, too, began to think that a larger organizing force might be at work.
Therefore, besides aiming at the alignment of research questions and current policy needs, room for innovative explorations is essential.
Looking at the alignment of M16707 and V00753 constructed by our program, we can see a high degree of conservation at the (5^{prime } -UTR regions of the target genes (Fig. 4).
We skipped measuring entropy if gaps occur in more than 50% of sequences at the alignment position.
At the alignment step, three mismatches were permitted.
The shift gives the number of possible insertions and deletions not considered at the alignment ends.
Ditags remained if they produced a single electronic PCR product at the alignment position.
The differences between the TP and FN at the alignment level are summarized as a heatmap (Additional file 7).
Not considering the special case of indels at the alignment ends would have classified this read as incorrectly mapped.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com