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Tandem DNA lesions are formed at substantial frequency by ionizing radiation and metal-catalyzed H2O2 reactions (reviewed in ref (6)).
The haplogroup R1a1-M17 is found at substantial frequency in Iraq, so limited gene flow or subsequent drift (or both) could account for its presence in the Shimar— although later migrations, slavery and trade provide alternative explanations.
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Due to strong advantages at the gamete level (drive), t haplotypes nevertheless occur at substantial frequencies.
Sequencing of an experimental population could be used to capture the distribution of haplotypes at substantial frequencies within a population, although the identification of very low frequency haplotypes is difficult even then.
In all clusters, the mutations responsible for the differences between the sequences were at substantial frequencies (>10%) with high coverage, suggesting that these sequences were either alleles or recent duplicates rather than simply sequencing errors.
Consistent with effective selection against higher mutation rates, there are no reports to date of mutator strains at substantial frequencies in natural yeast populations, despite the low rates of outcrossing inferred in such populations [ 43, 44].
While the insertion by any of the TLS pols is largely accurate, insertion of a wrong nucleotide also occurs at a substantial frequency.
However, a growing body of evidence has indicated that somatic retrotransposition in mammals not only occurs, but is likely to occur at a substantial frequency.
In a series of investigations in the late 1990s, Box and co-workers showed that double-base DNA lesions are formed at a substantial frequency by ionizing radiation and by metal-catalyzed H2O2 reactions (4– 7).
Overall, chromothripsis was detected at a substantial frequency in CLL (approximately 2%) through inference from SNP-array data, and was seen almost exclusively in CLL with IGHV-unmutated status and with mutated TP53.
A breakthrough in cancer etiology research has been the demonstration of exposure-specific mutational fingerprints in the TP53 tumor suppressor gene and in a few other genes that are found mutated in human tumors at a substantial frequency [ 4, 5].
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