If these mean values are above the selected thresholds and at least 70% of the peptide is composed of residues with known 3D coordinates, the peptide score is positive and a "1" flag is displayed at the end of the line.
Figure 6 shows summary receiver operating characteristics curves for commonly reported cut-off values and a curve of all studies at a selected threshold for each study.
Open water and lake-fringe swamps were not included in this section of the analysis due to the predominance of high overlap areas at the selected threshold values with no intersections with these land cover types.
The stepwise-selection process included an alternation between forward selection of a set of significant markers and backward elimination of markers that did not retain significance at the selected threshold after additional markers were placed in the model.
As a consequence, it is expected that at the selected threshold (P < 0.035) our best trio of TF (NCOA2, EP300, FHL2) show co-association with a large number of genes and other TF relevant for lipid, carbohydrate and energy metabolism.
Finally, SNPs with poor clustering were also excluded after visualisation with Evoker (briefly, associated SNPs at a selected threshold were selected for comparison of the two intensity channels against each other to manually check the proper assignment of the genotype-calling algorithm) [ 13].
In a reference genome G of size S G, a base b is marked as "covered" by a homologous scaffold base (b covered ) when it is located within the bases of a BLAST high-scoring segment pair (HSP) at the selected threshold.
Using Storey's q-value 11, 6, and 4 areas are selected thresholding at 20%; 10 and 5% respectively (see the solid funnel line in Fig. 1(B)).
Both previous [39] and current DTI studies with the same dataset have revealed reduced FA in the visual tracts, such as the optic radiation and IFO fasciculus of the early blind, Therefore, this will lead to less traceable fibers and less connectivity between regions at a group level concerning the selected threshold of 3 fibers.
Of 2,968 cDNA spots represented on the macroarray, 2,056 (69%) showed mean hybridization signals above the selected threshold value for at least one time point.
To further validate the effectiveness of the proposed HDLA model, its performance is compared with other existing models in terms of the average precision values at selected rank thresholds of 10, 20 and 30 (i.e, p@10, p@20 and p@30).
