We discussed the property of the permutation procedure in Additional file 1 in different situations, such as permutations at one SNP or multiple SNPs in LD, families with different numbers of affected and unaffected siblings, and recombination between SNPs.
"We are not looking at different permutations of months to get the results we wanted".
"India will go on," Narayan told the young Naipaul, and if this affirmation falls short of a political program it does proclaim a lifelong opportunity to observe, to invent, to express surprise at the permutations of human behavior, to smile.
Indicator values of medicinal plant species among forest-use types were tested for statistical significance using a Monte Carlo test at 1,000 permutations; significance was indicated by "*".
The LOD threshold score of more than 4.0 at 1,000 permutations was considered significant (P < 0.05) to identify and map the major QTLs on LGs governing DF and DM traits in chickpea.
We measured intervention efficacy by analyzing extensive partner-by-partner sexual behavior data that allowed us to look at many permutations of sexual risk and the impact of the intervention on them.
Using this software, we also calculated the significance thresholds at the chromosome-wise significance level through a total of 1000 permutations (at 0.1 cM steps) for LA and 1000 simulations (at 5 cM steps) for LDLA.
The change of connectivity in the permutants influenced the sequence of unfolding events mainly at the permutation site.
The list was cut at the permutation break nearest the expected number of true positives at a 5% FDR (i.e. 180 probe sets).
However, an alternative approach could be to perform the permutations at a chromosomal instead of at the genomic level.
