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One or more Salmonella isolates were detected in at least one sample type in every herd.
Proteins were only retained in the final analysis if detected in at least three replicates from at least one sample.
A variant position is reported if at least one sample supports it with QUAL no less than 30.
Six out of eight target PAAs were detected in at least one sample in the target analysis.
We assume throughout that, that is, each class is represented by at least one sample.
As a result, the majority of the analytes were detected in at least one sample for the five datasets.
At least one sample was obtained for 89% of pregnancies.
At least one sample was virus isolation positive.
After these exclusions, at least one sample from 238 individuals (including all 104 grandparents) remained.
Only 15,139 genes covered by >100 reads in at least one sample were considered.
Similarly, 524 of the 2353 novel loci were differentially expressed in at least one sample.
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