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Additional file 5: Subcellular localisation signals at individual transcript level.

Additional file 7: Biological pathways of the liver fluke at individual transcript level.

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A closer look at individual transcripts revealed that many students who did very well in their high school math and English courses, including a surprising number of high-achieving Advanced Placement and Honors students, scored poorly on our standardized placement tests.

As for differentiation at individual transcripts, the null hypothesis of no difference in gene clusters that co-varied in expression was rejected.

Taken together, we do not observe a clear effect of At-FLA4 on ABA metabolism at the individual transcript level.

Ultimately, other than expected transcriptional changes associated with E-cadherin dysfunction, at the individual transcript level there was minimal overlap between all five studies.

GSEA can be used to identify subtle but consistent pathway changes in microarray data when analysis at the individual transcript level cannot detect statistically significant variation.

Patterns of gene expression in the two interactions were examined at the individual transcript level by quantitative real-time PCR analysis (RT-qPCR).

We analyzed expression of the parental alleles at the individual transcript level, and simultaneously estimated the effects of all factors in the experimental design (age, sex, and mouse cross) on parental allelic expression.

Dye bias was measured at the individual transcript level within each batch of simultaneously processed arrays by replicate dual-labeled split-control sample hybridizations and accounted for a significant component of fluorescent signal differences.

DOI: http://dx.doi.org/10.7554/eLife.03523.022 At the individual transcript level, a sizeable fraction of lncRNAs associated with ribosomes displayed significantly higher coding scores than expected for non-coding sequences (p < 0.05 in all 100 intronic random sets; data in Supplementary file 2C; examples in Figure 6 figure supplement 6).

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