Sentence examples for at a given alignment from inspiring English sources

This could probably be because our program does not discriminate between the nature of amino acid present in DHA1 and SP families at a given alignment position.

The randomization was achieved by shuffling residues across sequences at a given alignment position as done by Mirny and Genfand [51].

Positional entropy measures how high or low is the variability at a given alignment position.

For the 5400 column-deleted alignments, columns of characters, i.e., all residues at a given alignment position, were randomly selected without replacement and deleted.

That is, alignments are re-coded in presence/absence patterns of gaps (two-state character: for a given alignment, each column containing at least one gap was considered a character and the presence/absence of a gap its state).

For a given alignment identity x, let Ix be the set of target strains with which the first segment has identity at least x.

The lengths of alignments were also trimmed so all sequences in a given alignment were the same length.

K is the number of sites in a given alignment.

This program uses a statistically optimized window size to detect selective constraints in specific codon regions of the given alignment at a particular branch of the phylogenetic tree that show the evolutionary history of the sequences under study [ 68].

Our results (Fig. 1) show that, in any given alignment, a significant fraction of the inserted gaps (30 80%) are placed at incorrect positions.

BLAST shows not only identical amino acids at a given position in the alignment, but also homologous substitutions, which are determined from the scoring matrix.