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This is an overly conservative number since some SNPs do show linkage disequilibrium between each other and, thus, the assumption of test independence central to the Bonferroni correction is not met.
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When using a slightly softer assumption of testing all MAF thresholds, we found that incorporating functional information from protein coding function algorithms generally improved the efficiency of the test, and added only a minor extra computational burden.
aP-values for equal variances not assumed (homogeneity assumption of t-test analysis was violated).
Egg count data for the fecundity experiment were log-transformed, and percentages for egg viability were square-root transformed to meet assumptions of tests.
The assumption of the test is that the fat mass and lean mass are independent.
Thus, the assumption of bounds testing will collapse in the presence of I(2) variable [26] (see Fig. 1).
Assumption of sphericity (Mauchley test) and normality (Shapiro-Wilk test) were tested for all of the dependent variables.
The authors should provide the explicit test statistic they use as well as the assumptions of the test.
Then the assumption of unidimensionality was tested before testing for DIF.
For continuous parameters, the assumption of normality was tested by Shapiro Wilk test.
aTwo sample t-test with assumption of unequal variance, Chi-square test or Wilcoxon rank sum test.
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