The phrase 'assumed context' is correct and usable in written English.
You can use it when making reference to a set of circumstances that are inferred or understood to be in effect, but not stated outright. For example, "Given the assumed context, it is clear that the outcome will be..."
While we have assumed context-dependent evolution using 16 different GTR models in this work, we have assumed the equilibrium frequencies to be context-independent.
But assuming Context makes it to launch, the benefit here would be that it's a set-it-and-forget-it kind of thing.
Further, when CG precedes a given site, the probability of observing a C at that site drops from 19.60% when assuming a single set of independent model frequencies to 15.98% when assuming context-dependent model frequencies.
Assuming context-dependence for all third codon positions on the A+T context of the two immediate flanking bases (GTR112+Γ112+CP112+F112+CD3 and GTR123+Γ123+CP123+F123+CD3) does not yield an increase over its independence counterpart (GTR112+Γ112+CP112+F112 and GTR123+Γ123+CP123+F123).
As a second-order Markov chain at the ancestral root sequence yields the largest increase in model fit, we have re-estimated the corresponding root distribution probabilities when assuming context-dependent model frequencies.
As a first attempt, we assume context-dependent evolution of the third codon position on its two immediate flanking bases (i.e. the second codon position of the same codon and the first codon position of the succeeding codon).
Based on the estimated 192 off-diagonal matrix entries of our context-dependent model assuming context-dependent model frequencies, we constructed Bayesian p-values (see e.g. [ 30]) to test whether the parameters were significantly different between an MCMC assuming independence at the ancestral root (i.e., a zero-order Markov chain) and a second-order Markov chain.
The specific context of such an appearance seldom matters, because the assumed larger context — of chronicling foolishness and stoking outrage — is so ingrained and powerful.
By these results, we defined a user profile of Target by Persona, and then, we assumed the context of use of Robot in the narrative of Persona, as follows: Target is standing sometimes attentive to its surroundings, sometimes inattentive, when Robot approaches.
Rather, we assume the context of hierarchical classification systems that are already in use within the communities using chemical data, and in that context we will compare different approaches to representation and automation.
Remote teams have to work harder to design and maintain these processes because they don't have the luxury of assuming shared context through a physical workspace.
