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Table 4 summarizes the relevant categories to emerge from analysis of gene functions (some of which emerged from DAVID and Ingenuity analyses) associated with the list of differentially expressed genes. Figure 2A and 2B summarize the interrelationships between pathways involved in glucose, fat, and energy metabolism and highlight differentially regulated genes that influence these pathways.
Additionally, WNT signalling and cancer pathways were found associated with the list of downregulated genes.
The most relevant GO [ 23] and PANTHER [ 38] terms associated with the list of 165 E-IAA modulated genes are shown.
The largest q-value in a list of genes declared to be differentially expressed provides an estimate of the upper bound of the positive False Discovery Rate (pFDR) associated with the list.
The cryptorchidism gene atlas is freely available online: http://www.integratomics-time.com/cryptorchidism/. Pathway analysis suggested the presence of twelve enriched pathways associated with the list of 179 literature-derived candidate genes.
To obtain a functional classification, the 56 genes whose expression changed following exposure to Gelsemium in SH-SY5Y cells were subjected to analysis of the enriched annotation terms associated with the list.
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Make sure the photos associated with the listing are real and substantial, as opposed to fake stock photos taken off different places on the internet.
Fold change values of the space-grown Mizuna genes associated with the listed Arabidopsis genes are shown.
NADPH oxidase genes in Arabidopsis are listed and fold change values of the space-grown Mizuna genes associated with the listed Arabidopsis genes are shown.
Extensive subsampling analysis was carried out to demonstrate the significance of the findings, and to estimate FDRs associated with the lists of differentially correlated genes.
The Ingenuity Pathways Analysis software (IPA, Ingenuity® Systems, http://www.ingenuity.com) was used to generate statistically relevant molecular interaction networks associated with the lists of differentially expressed genes.
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