Sentence examples for associated with alignment from inspiring English sources

The total aligned reads and total gene count were iteratively increased until the major components of variation were not associated with alignment depth or gene count.

NCCs are necessary for outflow tract septation and are also associated with alignment defects such as double outlet right ventricle (DORV) and VSDs.

Therefore, we analyzed these Yb alignments with PAML in two ways: 1) excluding any region with an indel, and 2) excluding any region with an indel as well as with one codon on either side (to reduce the chance calling of "false" substitutions associated with alignment problems).

Application of reference-free SNP detection methods and data structures could help to resolve the data storage and access issues associated with alignment-based methods meaning that true genome wide SNP and variant searches can be more easily commoditised for the medical and clinical markets and therefore be a crucial element in the deployment of personal genomics based medicine.

For all the BESs from a species, we stored the alignment position(s) on the chicken genome assembly, the length of the alignment in nucleotides, the distance along the chicken alignment between both ends in the case of a PBH, and the E-values associated with alignments.

Both Tabix and bigWig create large coverage files that strongly associate with alignment file size: at 160 million alignments, the Tabix coverage file is 1.2 GB while the bigWig coverage file is 1GB.

Second, PSI-BLAST alignments may have longer segments of ungapped alignment because the score associated with ungapped alignment is not reduced by the probability of entering another node.

A column similarity metric associated with an alignment algorithm or an alignment-free similarity metric is employed to compare the query motif to each motif in the database.

As read 2 mapped to more than one feature, we addressed this issue of read origin by defining prorating such that we considered any read with multiple alignments and features associated with that alignment.

To overcome the problems associated with global alignment, we employed BLAST-based alignment to calculate pairwise identities of genome sequences.

To more thoroughly address the possible genomic feature origins of our small RNA data sets, we used prorated counts (see Material and Methods for explanation) because it takes into account multiple alignments and different features associated with each alignment (Tables 2 and 3).