Sentence examples similar to assisted reference from inspiring English sources

The pipeline is capable of enhanced or manually assisted reference-based assembly using multiple assemblers and modes; gene predictor combining; and functional annotation of genes and gene products.

J. Satterly assisted in reference formatting.

Grant's son Fred assisted with references and proofreading.

SB assisted with referencing.

Alternatively, the genome sequence from a related model organism can be used in the assembly of short read data from the focal species, a process known as reference guided (or reference assisted) assembly [ 31, 32].

For reference assisted assembly sequence reads were aligned on reference genome (H37Rv) using bowtie2 program [ 25] with standard parameters (bowtie2 -x H37Rv - p30 -U raw_reads.fq -S aligned_reads.sam).sam

In addition to the tests above, we were interested in evaluating to what extent AlignGraph can improve the genome sequence generated with another reference assisted assembly approach.

The main reason for this conclusion is the low sensitivity and precision of purely computational reconstruction strategies, even when assisted by a reference genome.

De novo assembly was performed in Newbler 2.6 using default parameters, as well as in Mira (Version 3.4.0) where de novo assembly was assisted by a reference genome (FPVUS).

We report the result of SOAPdenovo, which is a representative for de Bruijn graph based short read assemblers and its result is comparable to several of other assemblers of the same kind, such as MetaVelvet [ 39], used for metagenomic data sets, and Velvet Columbus [ 22], used for reference assisted assembly.

The preoperative mean of each of the measures was plotted as a horizontal line to assist in referencing recovery.