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Domain information was annotated by InterProScan and functional assignments were mapped onto Gene Ontology (GO).
Pathway assignments were mapped according to the KEGG database (http://www.genome.ad.jp/kegg/kegg2.html) (versionKEGG) [ 51].
InterPro domains [ 64] were annotated by InterProScan [ 65] Release 16.0, and functional assignments were mapped onto GO [ 66].
InterPro [ 29] domains were annotated by InterProScan [ 30] (Release 27.0), and functional assignments were mapped onto Gene Ontology (GO) [ 31].
InterPro domains [ 56] were annotated by InterProScan [ 57] Release 36.0 and functional assignments were mapped onto Gene Ontology (GO) [ 58].
Domain assignments were mapped using HMMPfam (E-value of 10-3), which scans the sequences against HMMs of Pfam database.
Similar(51)
Cis and trans eQTLs assignments were restricted to probes that were mapped uniquely.
Using KAAS, each olive EST was assigned with a KEGG orthology (KO) number with the SBH (single-directional best hit) assignment method and the numbers subsequently were mapped to one of the KEGG's reference metabolic pathways.
Our idea is to superimpose the rigid substructures which were mapped in the first assignment step.
GO terms were mapped back to all possible E. electricus genes using their D. rerio assignments.
Then, Drosophila GO annotations were mapped to these nine terms with the help of the GO Slim assignment script map2slim.pl[ 9].
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