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Some clusters have not been assigned terms because the assignment threshold was missed or proteins containing the same terms were clustered in different protein clusters.
The error scale at the right in Figure 1 is doubled (relative to the scale on the left) to highlight the fact that the uncertainty is very close to 0.5 at the assignment threshold of logP = 2.0; the model is simply guessing at that point.
The assignment threshold of scores was 0.05.
All except glycinin did not pass the "secure" assignment threshold of S ≥ 200.
We used the Rannala and Mountain [ 69] Bayesian assignment method with the simulation method of Paetkau [ 70] and an assignment threshold level of 0.05 (see Additional file 13B).
A recent study by Roberts et al. [ 36] showed that relaxing assignment threshold to pure from 95% PP to 80% PP made little difference to their findings.
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9 The figure shows results for various thresholds as a cost effectiveness acceptability curve (figure) to illustrate uncertainty regarding assignment of threshold values for willingness to pay.
Since most methods yield a ranking of labels rather than an exact assignment, a threshold is often required.
The assignment of thresholds was studied among the datasets where a dose-response relationship was established.
Approximately 5000 GO terms had >10 assignments; this threshold is often considered as a minimal number of instances to learn a category in similar experiments (20).
The treatment is the number of meals with low content of artificial radionuclides; it was assigned based on the threshold assignment rule.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com