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Tree topologies from Panther differ slightly from the reference trees, resulting in the assignment of wrong gene relationships in the reconciled tree.
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Typical errors include wrong assignment of arguments, wrong event types, and missed arguments.
With respect to 'wrong' assignments, results indicate that while the percentage of wrong assignments obtained with INDUS 10-122%) is significantly lower than that of TACOA 22-311%) and MEGAN 23-355%), it is slightly higher than SPHINX (7-12%) and SOrt-ITEMS (4 -10%).
Number of identified peptides c. posterior error probability (PEP) estimates the probability of wrong assignment of a spectrum to a peptide sequence a.
Number of identified peptides c. posterior error probability (PEP) estimates the probability of wrong assignment of a spectrum to a peptide sequence Among quantified phosphoproteins, we then considered specific phosphosites in selected target proteins, such as Cdc2, stathmin, and cofilin as analyzed by mass-spectrometry (Table 3).
The main source of wrong assignments originated from classifying domain-specific terms like metabolite and gene names as verbs.
With decreasing verb-frequency, the fraction of wrong assignments per window slowly increases reaching ∼32% for the verb-candidates 4900 4950.
Hence, directly comparing overall error rates (fraction of wrong assignments), is not an appropriate comparative measure.
The phenotype of this tree is typical for Q. robur (see Figure 1) ruling out any possibility of wrong morphological assignment.
NQ flips denote the wrong assignment of oxygen and nitrogen atoms in amides.
An NQ-flip denotes the wrong assignment of the oxygen and nitrogen atoms in the amide groups of asparagine (N) and glutamine (Q).
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CEO of Professional Science Editing for Scientists @ prosciediting.com