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The assignment of the candidate sequences were made based on their phylogenetic position at the protein or the nucleic acid level.
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Any source interaction not classified as candidate biochemical reaction is considered for assignment to the candidate complex categories.
The approach requires assignment of candidate cell types to candidate genes and identifies potentially causal (non-coding) SNPs at which variation is predicted to influence transcription factor binding.
These include comparative genomics between plant species, screening and functional assignment of gene candidates, the discovery of novel DNA motifs, and the dissection of regulatory networks.
Algorithm 1 depends on two assignments, the current assignment and the candidate assignment.
If the best candidate assignment is better than (i.e. has a higher fitness value than) the current assignment then the candidate assignment should replace the current one.
Equation (41) says that the assignment of a carrier candidate for relaying depends on the ratio.
This secondary analysis of the miRanalyzer predictions allowed for more confidence in the assignment of candidate pre-miRNAs.
This allowed the assignment of gene candidates for ∼155 enzymatic functions in each of the species.
Moreover, the high density genetic linkage map predominantly based on gene-associated DNA markers provides an important tool for the assignment of candidate genes to quantitative trait loci (QTL), functional genomics and the integration of genetic and physical maps in perennial ryegrass, one of the most important temperate grassland species.
The overall criteria for assignment of candidates to the family were stringent and limiting, allowing us to eliminate many false positive hits.
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