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Assignment of rice orthologs to Arabidopsis late pollen-preferred genes.
To understand the molecular characteristics of the genes overlapped by QTLs, we used GO assignment of rice proteins provided by the Rice Annotation Project (http://rice.plantbiology.msu.edu/annotation_pseudo_goslim.shtml).shtml
GO analyses were performed by MSU-osa1 GOSlim Assignment of rice proteins (http://rice.plantbiology.msu.edu/GO.retrieval.shtml) to understand the BPs, MFs and CCs of rice QTLs involved in abiotic stress tolerance.
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Assignment of Arabidopsis orthologs to rice late pollen-preferred genes.
Second, for RFLP marker GBR1769, assignment of the orthologous and paralogous rice homologs was supported by the significant difference in sequence homology (Blast e-value: 6.0E-177 versus 6.0E-149).
We used the ETE package (Huerta-Cepas et al. 2010) to estimate the proportion of genes among the 6,878 single-copy orthologs that support (or not) an assignment of 70-15 genome within the rice lineage.
Out of 17 gene products with this assignment in rice, seven and six transcripts are found in the original and refined lists, respectively.
A total of 462 unigenes of rice stigmas and 115 of Arabidopsis stigmas were categorized into functional groups using the GO assignments.
PROFILE of rice.
"A bed of rice!
Just a mouthful of rice.
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