Sentence examples for assignment of reactions from inspiring English sources

For eukaryotic cells, stoichiometric reconstruction of the network includes the assignment of reactions to cellular compartments.

MEMOSys supports several different ways of compartmentalization which allows researchers to directly use exported models in analysis tools that do not support a fine-grained assignment of reactions to compartments.

Despite the importance of the approach to experimental biology, the confident assignment of reaction efficiency to the early cycles of real-time PCR reactions remains problematic.

This included the removal of non-metabolic reactions and reactions with generalized substrates, dereplication of reactions performed by isoenzymes and alternative formulations of reactions as found in Pathway Tools, assignment of reaction irreversibility where applicable and verification of cofactor specificities.

Since this procedure depends on the directionality of reactions without considering the structural features of metabolic netwotk, it may not identify some dependent reaction groups due to imperfect assignment of reaction directionality in the metabolic networks.

Compartmental assignment of the reactions was based on the reports in which protein localization experiments were performed [ 26, 27].

Category I reversal solutions to blocked reactions were validated by i) quantitative assignment of blocked reaction directionalities based on estimates of their Gibbs free energy changes [ 33] and ii) a query of experimentally reported reaction directionalities from the Brenda database [ 34].

The pooled reactions approach is ideally suited for investigating the metabolic potential of a community based solely on metagenomic data because the assignment of each reaction to a constituent guild is unnecessary.

Carefulness should, accordingly, be exercised regarding structure assignment to products of reactions designed to produce either of the two thermodynamically less stable [4,3-a] and [4,3-c] systems.

First, the overall metabolisms of the two yeasts were examined with compartmental assignment of duplicate metabolic reactions ignored in both yeasts, with the exception of metabolic reactions where the localization of these reactions was distinctly different.

This example demonstrates that the identified gene suppressions by GrowMatch may allude to incorrect assignment of genes to reactions.