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Cluster step: Given a set of prototypes, assign genes to prototypes and find their model parameters θ Prototype step: Given assignment of genes to prototypes (clusters), improve prototypes Since each step minimizes the global loss, alternating repeatedly between these steps will converge to a (potentially local) minima of the loss function.
The assignment of genes into different tissues was performed according to the Gene Expression Atlas analysis [24].
Below we describe the functional data that supports the assignment of genes in clusters VI and VII to encode enzymes that function in photorespiration in young seedlings.
Assignment of genes to multiple categories was tolerated.
The functional assignment of genes may be verified eventually by using experimental techniques.
The assignment of genes to groups was done preferentially to the most specific group.
The assignment of genes to discrete modules or sets has been successful in several respects.
These difficulties can complicate phylogenetic analysis and the assignment of genes to paralogous functions.
AAZ participated in discussions, suggested the assignment of genes to functional groups and gave textual advice.
The assignment of genes to certain functional categories is a central task in genome annotation.
After assignment of genes to one or several categories, enrichments of the categories are calculated.
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