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Assignment of compartments (left or right) and (start of the) negative handlings were all balanced for the different test days and over the total training period.
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For organisms, the assignment of individual compartments to their physiological counterparts is dependent on the route of administration.
This prediction accuracy is statistically significant (p<0.05) compared with a random assignment of genes to compartments (with an assignment probability for each compartment relative to its size in GO).
The assignment of sucrose-paired compartments and order of sucrose- and water-pairing were counterbalanced within each experimental group.
This reduction is primarily due to uncertainties associated with the assignment of functionalities to compartments as well as the expansion of the model with less studied reactions, as pointed out earlier [ 15].
MEMOSys supports several different ways of compartmentalization which allows researchers to directly use exported models in analysis tools that do not support a fine-grained assignment of reactions to compartments.
For eukaryotic cells, stoichiometric reconstruction of the network includes the assignment of reactions to cellular compartments.
The actual number of compartments and their assignment to the individual parts of the biosystem is crucial for preserving physical soundness of the model.
Each compartment was marked in a specific color using IPLab, and this false color reference image was used for compartment assignment of the individual tracks.
Essentially, both approaches solve a system of linear equations defined by the subcellular compartments (designated by marker abundances throughout the gradient) to find the relative assignment of a metabolite to the compartments by minimizing the discrepancy between the measured and computationally estimated (fitted) fraction abundances of this metabolite.
However, TIP did not, at the time this protein was encountered, include this suffix as a clue for compartment assignments; this resulted in the incorrect assignment of the cytosol as the ending compartment, rather than the starting compartment, of magnesium.
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