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The wrong name assignment is corrected in the LacED if the mutation profile is included in TEM mutation table.
In the SHVED, the wrong name assignment is corrected if its mutation profile is already included in SHV mutation table.
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This assignment was corrected in a later study (vide infra).
For reference, a second metric is also considered, called Diff_LL, which is the value of the S score from Equation 1 provided that the assignment is correct (LL1-LL4 for the AE-based system, or LL3-LL2 for the speech-based one, or S when both the AE model and the speech model are used).
After the user chooses which assignment is correct, the incorrect labels can be removed.
The previously suggested criterion of an AIC difference of >2 [ 5] corresponds to what Raftery termed "positive evidence" and a probability of >75% that the assignment is correct.
We have strong experimental evidence that shows that the higher is CLARK's confidence score for an assignment, the more likely that assignment is correct (see Additional file 1: Supplementary Note 2).
Always make sure that the information that you have put in your assignment is correct and look it up if you're not sure.
Retention times values were generally very similar in standard solutions and hydrothermal fluids, which confirms that our previous peak assignment was correct.
A quality score which reflects the probability of the assignment being correct is generated for each read.
The ambiguous assignment means that it is not possible to know which EST to gene assignment was correct without manual inspection and as such failed.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com