Sentence examples for assignment based upon from inspiring English sources
Given the annotation bias associated with functional assignment based upon sequence homology alone, this newly discovered MPD activity encoded by an MDD-like sequence suggests that functional expectations of the enzymes comprising the canonical MVA biosynthetic pathway must be reexamined.
Of the 109 features that were significantly enriched, 65 had a high confidence metabolite assignment based upon querying the determined mass against the HMDB and METLIN databases (Additional file 2: Table S1).
In those cases where haplogroup assignment based upon sequence polymorphisms in the control region was ambiguous, additional sequencing of coding region SNPs was performed as described elsewhere (Just, et al., 2008).
The GO based annotation "transcription regulator activity" was assigned to 113 spruce sequences (including 40 assignments based upon automatic annotations) and the annotation "transcription factor activity" (GO 0003700) was assigned to 90 of the same consensus sequences.
Users can then view the trees to make taxonomic assignments based upon phylogenetic position of query sequences relative to known ones.
In agreement with results from Urich et al. [23], our analyses indicate that taxonomic assignments based upon DNA 16S amplicons correspond well with assignments derived from ribosomal sequences within cDNA libraries.
This is consistent with observations of other groups [14], [50], [51] and highlights an inherent problem for obtaining high-resolution taxonomic assignments based upon variable regions of 16S rRNA gene sequences on a large scale.
Consensus sequences derived from Clusters were entered into the software that utilizes custom BLASTx, RPS-BLAST, and relational mySQL databases to identify potential functional assignments based upon sequence and functional domain similarity matching.
Assignment was based upon the 80% confidence level of the critical LOD score.
Site-cluster assignment was based upon the site being nearer to the geodesic centroid of a particular cluster than to that of any other cluster.
The assignment was based upon analytical comparison of the 1D spectrum of the ethanolic cell extract with that of a standard solution of D-sorbitol and confirmed by 2D-COSY experiments.
