The Germans invade, as expected.
Overall, results are as expected.
As expected, assignments were more accurate with increasing divergence, starting to level out at around 0.002.
TrOWL produced complete results when tested with smaller or simplified versions of the Genomic CDS ontology (using the HermiT reasoner as a comparison), but there is the possibility that some allele assignments did not occur as expected.
As expected, the assignment of linkage groups within the two salmonid species to the ancestral ray-finned fish karyotype indicates that most ancestrally derived 3R linkage groups are represented by approximately 4 whole or partial arm affinities in the salmonids (Table 1 and Figures 1, 2 and 3).
In this paper, the fuzzy quadratic assignment problem with penalty is formulated as expected value model, chance-constrained programming and dependent-chance programming according to various decision criteria, and the crisp equivalents are given.
As expected, the taxonomic assignment was well represented by Chlorophyta (90,074; 29.6%) and Embryophyta (11,229; 3.7%) within the Viridiplantae group.
The log likelihood surface (see Figure 4) for the E. coli K12 chromosome (NC_000913) shows the two symmetrical peaks that differ in assignment of leading vs lagging strands as expected for the bipartition model.
Low values of MR, corresponding to greater uncertainty in assignment to a particular integer, correlated as expected with (a) missing or uninformative data and (b) high copy number (see Additional file 1, Section 1d).
