Sentence examples for assigned to query from inspiring English sources

GO terms were assigned to query sequences based on three ontology classifications, i.e. biological process, molecular function, and cellular component.

These GO terms were assigned to query sequences, producing a broad overview of groups of genes catalogued in the transcriptome for each of three ontology vocabularies, biological processes, molecular functions [ 50] and cellular components [ 23].

Gene names were retrieved using NCBI mapping files "gene info" and "gene2accession," and GO terms were assigned to query sequences using the "Annotation" function with an E Value-Hit-Filter of 1 × 10-6 and annotationion cut off of 55 (default parameters).

Equation (1) defines the final score S p) assigned to each queried phosphopeptide p, which is calculated by adding up the scores for all the positions, where (1) S (p ) = ∑ j k P O S i, j − N E G i, j B G D i, j POS i,j, NEG i,j and BGD i,j are the frequency values for amino acid i at position j, in the POS, NEG and BGD matrices, respectively.

Separately, the transcript assembly was also searched by tBLAST and parsed at the same Eval 1e−10 criteria for the best matches among the KOGs (Eukaryotic Clusters of Orthologous Groups, http://genome.jgi-psf.org/help/kogbrowser.html) reference proteins, and through the best match, KOGs functional category assignments were assigned to the query transcript.

The main idea behind sequence-based methods is to compare the query protein to the proteins that are well characterized, and the function of the best hit is directly assigned to the query sequence.

The results table also includes information on the differences between the layers of the InChIs retrieved, and those assigned to the query.

To achieve this, it was recognized that the Standard InChI, and not simply the Standard InChIKey, assigned to the Query term would need to be compared to the Standard InChI assigned to the retrieved data.

If this score was >45, the GO term was assigned to the query sequence.

Based on these relative positions, a domain is assigned to the query sequence.

These GO terms are assigned to the query sequence resulting in an assessment of the biological process, the molecular function and the cellular compartments represented.