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We preferentially assigned evidence terms from Hippocampome.org definitions and links most relevant to the rodent hippocampal formation.
We assigned evidence levels to the reviewed studies based on the GRADE system definitions adopted by ATS [ 17].
Initially we assigned evidence from randomised trials as high quality and readjusted the level on the basis of deficiencies in the above domains.
Currently, 208 proteins (including 2 protein complexes), 254 reactions, and 130 pathways have been assigned evidence codes in LeishCyc, and 200 references have been added to the database (Table 1).
If the supporting evidence was experimental, an evidence icon of a flask appears in the Pathway Tools software visual representation, with the assigned evidence code being 'EV-EXP' (see Figure 1).
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The curriculum focused on key aspects of outpatient nephrology practice, including supervised clinic visits, formal themed didactic content, and an online interactive forum with assigned evidence-based readings and small-group responses to relevant cases.
A total of 594,902 spectra were confidently assigned evidencing 22,805 non-redundant peptides (Additional file 1).
We are currently researching novel methods to expand this concept to dynamically assign evidence as new content is fed into the corpus as well as learning from the analyst's responses whether or not the evidence that the automated process finds is relevant.
For each reaction r∈ R in the generic model, we assign evidence scores (E (r)) to deterministically evaluate which reactions to keep or remove when pruning to get a context-specific network.
These articles were assigned an evidence grade of A, B, or C depending on methodological quality and supporting evidence of the conclusions, based on a previously used adaptation of the American Diabetes Association's (ADA) evidence grading system [ 10, 11].
For each mapping of an EST to a gene, we assigned an evidence for transcription for the corresponding gene.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com